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Qualifications

PhD (Applied Mathematics, University of Southern California),
MS (Applied Mathematics, University of Southern California),
MS (Physics, University of Utah),
Diploma (Physics, Moscow Engineering Physics Institute)

About

Tatiana Tatarinova is a researcher in the area of computational biology and the leader of Glamorgan Computational Biology Group GlaComBio, karate tournament fighter, winner of prestigious 2010 Nisei week tournament video , and a pop singer.

Experience

Duration Role Institute
09/09 – Present Senior Lecturer in Statistics University of Glamorgan
06/09 – 09/09 Visiting Research Scientist II Georgia Institute of Technology
08/08 – 05/09 Visiting Assistant Professor Loyola Marymount University
08/07 – 05/08 Adjunct Lecturer Loyola Marymount University
04/08 – 06/09 Adjunct Lecturer California State University Channel Islands
06/00 – 03/08 Computational Scientist II Ceres, Inc
08/97- 12/00 Teaching and Research Assistant University of Southern California
05/96 -07/97 Regional Coordinator CDC Moscow
03/93 -03/95 Teaching and Research Assistant University of Utah

Responsibilities

Publications

Citations
Books
  • DNA Methylation – from Genomics to Technology, edited by T. Tatarinova, 2012
  • GC3 Biology in Eukaryotes and Prokaryotes (Book Chapter)
    by Eran Elhaik and Tatiana Tatarinova
    in the book “DNA Methylation – From Genomics to Technology” ISBN 978-953-51-0320-2, InTech, March 3, 2012
Articles

Year 2012

  • DNA Barcoding the Native Flowering Plants and Conifers of Wales. de Vere N, Rich TCG, Ford CR, Trinder SA, Long C, et al. (2012) :Natasha de Vere*, Tim C. G. Rich, Col R. Ford, Sarah A. Trinder, Charlotte Long, Chris W. Moore, Danielle Satterthwaite, Helena Davies, Joel Allainguillaume, Sandra Ronca, Tatiana Tatarinova, Hannah Garbett, Kevin Walker, Mike J. Wilkinson
    PLoS ONE 7(6): e37945. doi:10.1371/journal.pone.0037945
  • PROMOTER, PROMOTER CONTROL ELEMENTS, AND COMBINATIONS, AND USE THEREOF
    R Schneeberger, T Tatarinova, Y Fang, N Alexandrov, L Medrano, R Pennell, et al. US Patent 20,120,124,701, 2012
  • Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua : Álvaro L. Pérez-Quintero, Gaurav Sablok, Tatiana V. Tatarinova, Ana Conesa, Jimmy Kuo and Camilo López BIOTECHNOLOGY LETTERS Volume 34, Number 4 (2012), 737-745, DOI: 10.1007/s10529-011-0808-0
  • Genome-wide Evaluation of Codon Biology in Citrus and Poncirus Based on Genomic Features and Frame Corrected Expressed Sequence Tags : Touqeer Ahmad, Gaurav Sablok, Tatiana V Tatarinova, Qiang Xu, Wen-Wu Guo (in preparation)

Year 2011

  • Alvaro L. Pe´rez-Quintero, Gaurav Sablok,Tatiana V. Tatarinova, Ana Conesa,,Jimmy Kuo, Camilo Lo´pez, Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua (2011) Biotechnol Lett, DOI 10.1007/s10529-011-0808-0
  • Victor V Solovyev and Tatiana V Tatarinova, Towards the integration of genomics, epidemiological and clinical data, Genome Medicine 2011, 3:48 doi:10.1186/gm264, Published: 27 July 2011
  • R Jelliffe , Ml Neely, A Schumitzky, D Bayard, M V Guilder, A Botnen, A Bustad, D Laing, W Yamada, J Bartroff, T Tatarinova, A letter to editor of Pharmacological Research is published in Volume 64, Issue 4, October 2011, Pages 426.
  • Gaurav Sablok, Kinshuk Chandra Nayak, Franck Vazquez and Tatiana V. Tatarinova (2011) “Synonymous codon usage, GC_3 and Evolutionary patterns across plastomes of three pooid model species – Emerging grass genome models for monocots.” Molecular Biotechnology, 2011, Feb. 11
  • Gaurav Sablok, Álvaro L Pérez-Quintero, Mehedi Hassan, Tatiana V Tatarinova, Camilo López (2011), “Artificial microRNAs (amiRNAs) engineering – On how microRNA-based silencing methods have affected current plant silencing research”, in Press, Biochemical and Biophysical Research Communications.
  • Gaurav Sablok, Lee Wan Sin, Farzana Rahmann,Tatiana V. Tatarinova, Jennifer Ann Harikrishna, Zhengrong Luo, “Bioinformatic analysis of fruit specific expressed sequence tag (EST) libraries of Diospyros kaki Thunb – view at the transcriptome at different developmental stages”(2011), in Press,3Biotech.
  • Tatiana Tatarinova and Alan Schumitzky. Bayesian Analysis of Nonlinear Mixture Models, book to appear 2011, Imperial College Press.

Year 2009-2010

  • Tatiana Tatarinova, Nickolai Alexandrov, John Bouck, and Kenneth Feldman.GC3 biology in corn, rice, sorghum and other grasses, BMC Genomics 2010, 11:308. open access
  • Maxim Troukhan, Tatiana Tatarinova*, John Bouck, Richard Flavell and Nickolai Alexandrov. Genome-wide discovery of cis-elements in promoter sequences using gene expression data, (*corresponding author), OMICS: A Journal of Integrative Biology, 2009, 13(2).
    open access
  • N. Alexandrov, V. Brover, S. Freidin, M. Troukhan, T. Tatarinova, H. Zhang, T. Swaller,Y.-P. Lu, J. Bouck, R. Flavell and K. Feldmann. Insights into Corn Genes Derived from Large-Scale cDNA Sequencing, Plant Molecular Biology, 2009, 69(1-2).

Year 2000-2008

  • Tatiana Tatarinova, John Bouck and Alan Schumitzky. Kullback-Leibler Markov Chain Monte Carlo – A New Algorithm for Finite Mixture Analysis and its Application to Gene Expression Data, Journal of Bioinformatics and Computational Biology, 2008, 6(4).
  • Tatiana Tatarinova. Broadly Expressed Regulatory Regions, Publication Date: 29.05.2008, Publication Number: WO/2008/064128
  • Leonard Medrano, Yiwen Fang, Richard Schneeberger, Yu-Ping Lu, Nickolai Alexandrov, Tatiana Tatarinova, Yiwen Fang, Jack Okamuro. Promoter, promoter control elements, and combinations, and uses thereof, Publication Date: 04.10.2007, Publication Number: WO/2007/112326.
  • N. Alexandrov, M. Troukhan, S. Brover, T. Tatarinova, R. Flavell, K. Feldmann. Features of Arabidopsis genes and genome discovered using full-length cDNAs, Plant Molecular Biology, 2006, 60:69-85.
  • Nestor Apuya, Shing Kwok, Nickolai Alexandrov, Tatiana Tatarinova, Yiwen Fang, Roger Pennell, Yu-Ping Lu, Leonard Medrano, Zhihong Cook, Kenneth Feldmann. Promoter, promoter control elements, and combinations, and uses thereof, Publication Date: 30.03.2006, Publication Number: WO/2006/034479.
  • Leonard Medrano, Kenneth Feldmann, Tatiana Tatarinova. Root active promoters and uses thereof, Publication Date: 22.06.2006, Publication Number: WO/2006/066193.
  • Yiwen Fang, Roger Pennell, Chuan-Yin Wu, Zhihong Cook, Tatiana Tatarinova, Hongyu Zhang. Methods for modifying plant characteristics, Publication Date: 24.11.2005, Publication Number: WO/2005/111216.
  • Richard Schneeberger, Ke Zhang, Tatiana Tatarinova, Max Troukhan, Shing F. Kwok, Josh Drais, Kevin Klinger, Francis Orejudos, Kimberly Macy, Amit Bhakta, James Burns, Gopal Subramanian, Jonathan Donson, Richard Flavell and Kenneth A. Feldmann. Agrobacterium T-DNA integration in Arabidopsis is correlated with DNA sequence compositions that occur frequently in gene promoter regions, Journal of Functional Integrated Genomics 2005, Oct;5(4):240-53.
  • T. Tatarinova, V. Brover, M. Troukhan, N. Alexandrov. Skew in CG content near the transcription start site in Arabidopsis thaliana, Bioinformatics, Vol. 19 Suppl. 1 2003.
  • Koen Weterings, Nestor Apuya, Tatiana Tatarinova, Robert Goldberg. Polynucleotides useful for modulating transcription, Publication Date: 06.06.2002, Publication Number:WO/2002/044333, United States Patent 6855866.
  • Robert Fischer, Yeonhee Choi, Mike Hannon, Jack Okamuro, Tatiana Tatarinova. Nucleic acids that control plant development, Publication Date: 01.11.2001, Publication Number: WO/2001/080626.

Years 1994-1995

  • Tatiana Tatarinova. Thomas – Fermi approach to excitons under FQHE regime, Master of Science thesis, University of Utah, 1995.
  • T. Tatarinova, E. Rashba and A. Efros. Continuum excitons in the fractional quantum Hall effect regime: Steps in the filling factor dependence of the energy, Physical Review B, 15 December 1994, 50 (23).

Memberships

American Mathematical Society
International Society for Computational Biology

External

Membership of Editing Panels

Awards

  • 2010 Paper on GC3 analysis was selected for presentation at 2011 ISMB/ECCB conference as one of the 2010 highlights
  • Selected as one of the 30 of Wales’s most promising researchers to participate in the first Welsh Crucible in 2011.
  • Royal Society Travel Grant 2011
  • NSF-AWM Grant, 2009
  • International Society for Computational Biology-National Science Foundation travel grant, 2008
  • Burrows-Wellcome Fund fellowship, 1997
  • Soros Foundation travel grant, 1992

Research

Computational Molecular Biology

  • Development of novel algorithms for biological data analysis
  • Statistical data analysis and experiment design
  • Pharmacokinetics and functional genomics
  • Building bioinformatics tools and pipelines for biologists

My Patents (Detail List here)

Year 2010

*Tatiana Tatarinova: Broadly Expressing Regulatory Regions. Apr, 29 2010: US20100107275

*Leonard MEDRANO, Yiwen Fang, Richard Schneeberger, Yu-Ping Lu, Nickolai Alexandrov, Tatiana Tatarinova, Jack Okamuro: Promoter, Promoter Control Elements, And Combinations, And Uses Thereof. Ceres. Nov, 25 2010: US20100299784

*Leonard Medrano, Kenneth Feldmann, Tatiana Tatarinova: Root Active Promoters, And Uses Thereof. Ceres. Oct, 21 2010: US20100269222

*Leonard Medrano, Yiwen Fang, Richard Schneeberger, Yu-Ping Lu, Nickolai Alexandrov, Tatiana Tatarinova, Jack Okamuro: Promoter, Promoter Control Elements, And Combinations, And Uses Thereof. Ceres. Jul, 1 2010: US20100170002

Year 2009

*Nickolai Alexandrov, Nestor Apuya, Vyacheslav Brover, Xianfeng Chen, Jean-Baptiste Dumas, Yiwen Fang, Kenneth Feldmann, Peter Mascia, Jack Okamuro, Roger Pennell, Richard Schneegerger, Gopalakrishnan Subramanian, Maxim Troukhan, Liansheng Zheng, Edward Kiegle, Diane Jofuku Okamuro, William J Kimmerly, Shing Kwok, Tatiana Tatarinova, Wayne Volkmuth:Sequence-determined Dna Fragments And Corresponding Polypeptides Encoded Therapy. Oct, 22 2009: US20090265815

*Nestor Apuya, Shing Kwok, Nickolai Alexandrov, Tatiana Tatarinova, Yiwen Fang, Roger Pennell, Yu-Ping Lu, Leonard Medrano, Zhihong Cook, Kenneth Feldmann : Promoter, Promoter Control Elements, And Combinations, And Uses Thereof. Ceres. May, 21 2009: US20090133163

Year 2008

*Leonard Medrano, Kenneth Feldmann, Tatiana Tatarinova: Root Active Promoters And Uses Thereof. Sep, 25 2008: US20080235823

*Leonard Medrano, Kenneth Feldmann, Tatiana Tatarinova: Root Active Promoters And Uses Thereof. Ceres. Jun, 10 2008: US7385105

*Leonard MEDRANO, Tatiana Tatarinova: Promoter, Promoter Control Elements, And Combinations, And Uses Thereof. Ceres. Jun, 5 2008: US20080134357

*Nestor Apuya, Shing Kwok, Nickolai Alexandrov, Tatiana Tatarinova, Yiwen Fang, Roger Pennell, Yu-Ping Lu, Leonard Medrano, Zhihong Cook, Kenneth Feldmann: Promoter, Promoter Control Elements, And Combinations, And Uses Thereof. Ceres. May, 27 2008: US7378571

Year 2006

*Leonard Medrano, Kenneth Feldmann, Tatiana Tatarinova: Root Active Promoters And Uses Thereof. Ceres. Jun, 29 2006: US20060143735

*Nestor Apuya, Shing Kwok, Nickolai Alexandrov, Tatiana Tatarinova, Yiwen Fang, Roger Pennell, Yu-Ping Lu, Leonard Medrano, Zhihong Cook, Kenneth Feldmann: Promoter, Promoter Control Elements, And Combinations, And Uses Thereof. Ceres. Apr, 27 2006: US20060090216

*Yiwen Fang, Roger I Pennell, Chuan-Yin Wu, Zhihong C Cook, Tatiana Tatarinova, Hongyu Zhang: Methods For Modifying Plant Characteristics. Jan, 26 2006: US20060021089

Year 2003

*Robert Fischer, Yeonhee Choi, Mike Hannon, Jack Okamuro, Tatiana Tatarinova: Nucleic Acids That Control Plant Development. Jul, 17 2003: US20030135890

*Koen Weterings, Nestor R Apuya, Tatiana Tatarinova, Robert B Goldberg: Polynucleotides Useful For Modulating Transcription. Mar, 27 2003: US20030061632

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